Complete genome sequencing and in silico genome mining reveal the promising metabolic potential in Streptomyces strain CS-7

完整基因组测序和计算机基因组挖掘揭示了链霉菌菌株 CS-7 的良好代谢潜力

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作者:Khorshed Alam, Jinfang Hao, Lin Zhong, Guoqing Fan, Qing Ouyang, Md Mahmudul Islam, Saiful Islam, Hongluan Sun, Youming Zhang, Ruijuan Li, Aiying Li

Abstract

Gram-positive Streptomyces bacteria can produce valuable secondary metabolites. Streptomyces genomes include huge unknown silent natural product (NP) biosynthetic gene clusters (BGCs), making them a potential drug discovery repository. To collect antibiotic-producing bacteria from unexplored areas, we identified Streptomyces sp. CS-7 from mountain soil samples in Changsha, P.R. China, which showed strong antibacterial activity. Complete genome sequencing and prediction in silico revealed that its 8.4 Mbp genome contains a total of 36 BGCs for NPs. We purified two important antibiotics from this strain, which were structurally elucidated to be mayamycin and mayamycin B active against Staphylococcus aureus. We identified functionally a BGC for the biosynthesis of these two compounds by BGC direct cloning and heterologous expression in Streptomyces albus. The data here supported this Streptomyces species, especially from unexplored habitats, having a high potential for new NPs.

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