Developmental Relationships of Four Exhausted CD8+ T Cell Subsets Reveals Underlying Transcriptional and Epigenetic Landscape Control Mechanisms

四种耗竭型CD8+ T细胞亚群的发育关系揭示了潜在的转录和表观遗传调控机制

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作者:Jean-Christophe Beltra ,Sasikanth Manne ,Mohamed S Abdel-Hakeem ,Makoto Kurachi ,Josephine R Giles ,Zeyu Chen ,Valentina Casella ,Shin Foong Ngiow ,Omar Khan ,Yinghui Jane Huang ,Patrick Yan ,Kito Nzingha ,Wei Xu ,Ravi K Amaravadi ,Xiaowei Xu ,Giorgos C Karakousis ,Tara C Mitchell ,Lynn M Schuchter ,Alexander C Huang ,E John Wherry

Abstract

CD8+ T cell exhaustion is a major barrier to current anti-cancer immunotherapies. Despite this, the developmental biology of exhausted CD8+ T cells (Tex) remains poorly defined, restraining improvement of strategies aimed at "re-invigorating" Tex cells. Here, we defined a four-cell-stage developmental framework for Tex cells. Two TCF1+ progenitor subsets were identified, one tissue restricted and quiescent and one more blood accessible, that gradually lost TCF1 as it divided and converted to a third intermediate Tex subset. This intermediate subset re-engaged some effector biology and increased upon PD-L1 blockade but ultimately converted into a fourth, terminally exhausted subset. By using transcriptional and epigenetic analyses, we identified the control mechanisms underlying subset transitions and defined a key interplay between TCF1, T-bet, and Tox in the process. These data reveal a four-stage developmental hierarchy for Tex cells and define the molecular, transcriptional, and epigenetic mechanisms that could provide opportunities to improve cancer immunotherapy.

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