Single-cell transcriptomic analysis of normal and pathological tissues from the same patient uncovers colon cancer progression

对同一患者的正常和病理组织进行单细胞转录组分析揭示结肠癌进展

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作者:Ruifang Sun #, Yang Yang #, Weidong Lü #, Yanqi Yang, Yulong Li, Zhigang Liu, Dongmei Diao, Yang Wang, Su'e Chang, Mengnan Lu, Qiuyu Jiang, Bingling Dai, Xiaobin Ma, Chang'an Zhao, Moqi Lü, Juan Zhang, Caixia Ding, Na Li, Jian Zhang, Zhengtao Xiao #, Dangxia Zhou #, Chen Huang #5

Abstract

The aim of the present study was to elucidate the evolutionary trajectory of colon cells from normal colon mucosa, to adenoma, then to carcinoma in the same microenvironment. Normal colon, adenoma and carcinoma tissues from the same patient were analyzed by single-cell sequencing, which perfectly simulated the process of time-dependent colon cancer due to the same microenvironment. A total of 22 cell types were identified. Results suggest the presence of dominant clones of same cells including C2 goblet cell, epithelial cell subtype 1 (Epi1), enterocyte cell subset 0 (Entero0), and Entero5 in carcinoma. Epi1 and Entero0 were Co-enriched in antibacterial and IL-17 signaling, Entero5 was enriched in immune response and mucin-type O-glycan biosynthesis. We discovered new colon cancer related genes including AC007952.4, NEK8, CHRM3, ANO7, B3GNT6, NEURL1, ODC1 and KCNMA1. The function of TBC1D4, LTB, C2CD4A, AND GBP4/5 in T cells needs to be clarified. We used colon samples from the same person, which provide new information for colon cancer therapy.

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