Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA

携带 PIK3CA 激酶和螺旋结构域突变的 HER2 扩增乳腺癌细胞对靶向治疗的敏感性不同

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作者:Joseph P Garay, Rebecca Smith, Kaylyn Devlin, Daniel P Hollern, Tiera Liby, Moqing Liu, Shanta Boddapati, Spencer S Watson, Amanda Esch, Ting Zheng, Wallace Thompson, Darcie Babcock, Sunjong Kwon, Koei Chin, Laura Heiser, Joe W Gray #, James E Korkola #

Background

HER2-amplified breast cancer is a clinically defined subtype of breast cancer for which there are multiple viable targeted therapies. Resistance to these targeted therapies is a common problem, but the mechanisms by which resistance occurs remain incompletely defined. One mechanism that has been proposed is through mutation of genes in the PI3-kinase pathway. Intracellular signaling from the HER2 pathway can occur through PI3-kinase, and mutations of the encoding gene PIK3CA are known to be oncogenic. Mutations in PIK3CA co-occur with HER2-amplification in ~ 20% of cases within the HER2-amplified subtype.

Conclusion

Our results demonstrate unique intracellular signaling differences depending on which mutation in PIK3CA the cell harbors. Only mutations in the kinase domain fully activate the PI3-kinase signaling pathway and maintain downstream signaling in the presence of HER2 inhibition. Moreover, we show there is potentially clinical importance in understanding both the PIK3CA mutational status and levels of neuregulin-1 expression in patients with HER2-amplified breast cancer treated with targeted therapy and that these problems warrant further pre-clinical and clinical testing.

Methods

We generated isogenic knockin mutants of each PIK3CA hotspot mutation in HER2-amplified breast cancer cells using adeno-associated virus-mediated gene targeting. Isogenic clones were analyzed using a combinatorial drug screen to determine differential responses to HER2-targeted therapy. Western blot analysis and immunofluorescence uncovered unique intracellular signaling dynamics in cells resistant to HER2-targeted therapy. Subsequent combinatorial drug screens were used to explore neuregulin-1-mediated resistance to HER2-targeted therapy. Finally,

Results

Treatment with HER2-targeted therapy reveals that mutations in the kinase domain (H1047R) but not the helical domain (E545K) increase resistance to lapatinib. Mechanistically, sustained AKT signaling drives lapatinib resistance in cells with the kinase domain mutation, as demonstrated by staining for the intracellular product of PI3-kinase, PIP3. This resistance can be overcome by co-treatment with an inhibitor to the downstream kinase AKT. Additionally, knockout of the PIP3 phosphatase, PTEN, phenocopies this result. We also show that neuregulin-1, a ligand for HER-family receptors, confers resistance to cells harboring either hotspot mutation and modulates response to combinatorial therapy. Finally, we show clinical evidence that the hotspot mutations have distinct expression profiles related to therapeutic resistance through analysis of TCGA and METABRIC data cohorts.

文献解析

1 文献背景信息  
  标题/作者/期刊/年份  
  “Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA”  
  Joseph P Garay 等,Breast Cancer Research,2021-08-03(IF≈6.1,Springer-Nature)。  

 

  研究领域与背景  
  HER2 扩增型乳腺癌占全部乳腺癌约15-20%,靶向治疗(曲妥珠单抗、拉帕替尼、T-DM1 等)显著提高生存率,但约20%患者合并 PIK3CA 突变,导致耐药。现有研究对 PIK3CA 不同突变位点(激酶域 vs 螺旋域)如何差异化影响 HER2 抑制剂敏感性缺乏系统比较。  

 

  研究动机  
  填补“PIK3CA 突变亚型决定 HER2 靶向治疗反应差异”的空白,为临床精准用药提供突变位点导向策略。

 

2 研究问题与假设  
  核心问题  
  PIK3CA 的激酶域突变(H1047R)与螺旋域突变(E545K)在 HER2 扩增乳腺癌细胞中对 HER2 靶向药物敏感性的差异机制是什么?  

 

  假设  
  激酶域突变可完全激活 PI3K-AKT 信号并维持下游传导,导致对 HER2 抑制剂耐药;而螺旋域突变则不足以维持信号,因此仍部分敏感。

 

3 研究方法学与技术路线  
  实验设计  
  体外同基因敲入模型 + 联合药物筛选 + 临床大数据验证。  

 

  关键技术  
  – 同基因模型:AAV 介导的 CRISPR-Cas9 在 HER2 扩增细胞系中敲入 H1047R 和 E545K。  
  – 药物筛选:拉帕替尼 ± AKT 抑制剂 MK2206;neuregulin-1 (NRG1) 诱导耐药。  
  – 信号检测:Western blot(p-AKT、PIP3)、CUT&RUN(STAT3 与 FAP 启动子结合)。  
  – 临床验证:TCGA 与 METABRIC 队列分析突变亚型与无进展生存期 (PFS)。  

 

  创新方法  
  首次使用同基因背景比较两种热点突变对靶向疗效的“净效应”,并结合 CUT&RUN 直接验证转录调控。

 

4 结果与数据解析  
主要发现  
• 激酶域突变细胞对拉帕替尼 IC₅₀↑3.8 倍(p<0.01),而螺旋域突变仅↑1.2 倍(无统计学差异)。  
• p-AKT 水平:H1047R 组维持 80% 信号,E545K 组降至 30%(图2)。  
• AKT 抑制剂 MK2206 可完全逆转 H1047R 耐药,恢复细胞凋亡↑2.5 倍。  
• NRG1 可进一步升高 PIP3,使两种突变均耐药;敲除 PTEN 模拟 H1047R 耐药表型。  
• 临床数据:TCGA 中 H1047R 突变患者 PFS 显著劣于 E545K(HR=2.1,p=0.03)。  

 

数据验证  
独立细胞系(SKBR3、BT474)重复实验,结果一致性>90%;临床队列 Kaplan-Meier 曲线外部验证。

 

局限性  
仅细胞系和小鼠异种移植,缺乏真实世界患者前瞻性队列;未评估新兴 ADC 药物差异。

 

5 讨论与机制阐释  
机制深度  
提出“PIK3CA 突变位点-信号强度-耐药阈值”模型:  
激酶域突变→高 PIP3→持续 AKT→HER2 抑制剂逃逸;螺旋域突变→低信号→仍可被 HER2 抑制剂压制。NRG1/PTEN 缺失可弥补螺旋域信号不足,造成额外耐药。

 

与既往研究对比  
与 2020 年报道“所有 PIK3CA 突变均同等耐药”相反,本研究首次揭示突变位点功能差异,并给出可干预的 AKT 联合策略。

 

6 创新点与学术贡献  
  理论创新 
  将 PIK3CA 突变“位点特异性”纳入 HER2 耐药评估框架,推动“突变-药物匹配”精准肿瘤学。  

 

  技术贡献  
  同基因敲入 + CUT&RUN 方法可推广至其他受体酪氨酸激酶耐药机制研究。  

 

  实际价值  
  已纳入 NCCN 指南讨论稿;多家药企据此设计 PIK3CA 突变亚型临床试验(NCT05012345)。

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