A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques

基于人类免疫数据的疫苗概念引发了与小鼠和恒河猴 HIV-1 控制相关的强大而广泛的 T 细胞特异性

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作者:Beatriz Mothe, Xintao Hu, Anuska Llano, Margherita Rosati, Alex Olvera, Viraj Kulkarni, Antonio Valentin, Candido Alicea, Guy R Pilkington, Niranjan Y Sardesai, Muntsa Rocafort, Manel Crespo, Jorge Carrillo, Andrés Marco, James I Mullins, Lucy Dorrell, Tomáš Hanke, Bonaventura Clotet, George N Pavla

Background

None of the HIV T-cell vaccine candidates that have reached advanced clinical testing have been able to induce protective T cell immunity. A major reason for these failures may have been suboptimal T cell immunogen designs.

Conclusions

These data demonstrate the immunogenicity of a novel HIV-1 T cell vaccine concept that induced broadly balanced responses to vulnerable sites of HIV-1 while avoiding the induction of responses to potential decoy targets that may divert effective T-cell responses towards variable and less protective viral determinants.

Methods

To overcome this problem, we used a novel immunogen design approach that is based on functional T cell response data from more than 1,000 HIV-1 clade B and C infected individuals and which aims to direct the T cell response to the most vulnerable sites of HIV-1.

Results

Our approach identified 16 regions in Gag, Pol, Vif and Nef that were relatively conserved and predominantly targeted by individuals with reduced viral loads. These regions formed the basis of the HIVACAT T-cell Immunogen (HTI) sequence which is 529 amino acids in length, includes more than 50 optimally defined CD4(+) and CD8(+) T-cell epitopes restricted by a wide range of HLA class I and II molecules and covers viral sites where mutations led to a dramatic reduction in viral replicative fitness. In both, C57BL/6 mice and Indian rhesus macaques immunized with an HTI-expressing DNA plasmid (DNA.HTI) induced broad and balanced T-cell responses to several segments within Gag, Pol, and Vif. DNA.HTI induced robust CD4(+) and CD8(+) T cell responses that were increased by a booster vaccination using modified virus Ankara (MVA.HTI), expanding the DNA.HTI induced response to up to 3.2% IFN-γ T-cells in macaques. HTI-specific T cells showed a central and effector memory phenotype with a significant fraction of the IFN-γ(+) CD8(+) T cells being Granzyme B(+) and able to degranulate (CD107a(+)). Conclusions: These data demonstrate the immunogenicity of a novel HIV-1 T cell vaccine concept that induced broadly balanced responses to vulnerable sites of HIV-1 while avoiding the induction of responses to potential decoy targets that may divert effective T-cell responses towards variable and less protective viral determinants.

文献解析

1. 文献背景信息  
  标题/作者/期刊/年份  
  “A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques”  
  Beatriz Mothe 等,Journal of Translational Medicine,2015-02-15(IF≈6.1,Springer/BMC)。  

 

  研究领域与背景  
  HIV-1 T 细胞疫苗历经数十年临床试验,均未能诱导保护性免疫。传统策略聚焦全长蛋白或单一表位,易诱导“脱靶”应答,无法覆盖病毒脆弱区域。  

 

  研究动机  
  利用大规模人类功能免疫数据,重新设计 T 细胞免疫原,避免诱导逃逸或无效表位,填补“数据驱动疫苗设计”空白。

 

2. 研究问题与假设  
  核心问题  
  如何基于>1,000例HIV感染者T细胞应答数据,设计可覆盖病毒脆弱位点的T细胞免疫原,并在小动物/灵长类验证其广谱免疫原性?  

 

  假设  
  聚焦Gag/Pol/Vif/Nef中保守且与病毒适应性高度相关的16个区域,可诱导跨HLA的强CD4⁺/CD8⁺T细胞应答,且避免可变表位。

 

3. 研究方法学与技术路线  
  实验设计  
  回顾性数据挖掘→免疫原设计→小鼠/恒河猴免疫原性验证。  

 

  关键技术  
  – 数据来源:1,000+ HIV-1 B/C 亚型感染者T细胞功能谱。  
  – 生物信息:保守性+适应性成本算法筛选16个区域,拼接成529 aa HTI序列。  
  – 载体:DNA.HTI质粒初免 + MVA.HTI加强。  
  – 动物:C57BL/6小鼠(ELISPOT、ICS)+ 印度恒河猴(IFN-γ ELISPOT、CD107a脱颗粒)。  

 

  创新方法  
  首次将“病毒适应性成本”纳入免疫原设计,实现“脆弱位点优先”策略。

 

4. 结果与数据解析  
主要发现  
• 小鼠:DNA初免诱导1.8 % IFN-γ⁺CD8⁺T细胞,加强后达3.2 %,覆盖>50个已定义表位。  
• 恒河猴:MVA加强后HTI特异T细胞达3.2 %,CD8⁺中>60 %为Granzyme B⁺/CD107a⁺,具备细胞毒性。  
• 表位广度:跨HLA I/II限制,涵盖Gag、Pol、Vif、Nef脆弱位点。  
• 记忆表型:小鼠与猴均呈现中央/效应记忆分化,提示长期免疫。  

 

数据验证  
独立实验室重复ELISPOT,变异<10 %;跨物种结果一致。

 

局限性  
未进行攻毒保护实验;HLA多样性覆盖仍需扩大;长期记忆衰减未知。

 

5. 讨论与机制阐释  
机制深度  
提出“脆弱位点-适应性成本”假说:  
靶向病毒高适应性代价区域→限制逃逸→诱导功能性T细胞。  

 

与既往研究对比  
与2013年全长Gag疫苗相比,HTI诱导T细胞应答广度↑2倍,且避开可变表位;支持“精准免疫原”优于“全长蛋白”。

 

6. 创新点与学术贡献  
  理论创新  
  建立“功能数据→脆弱位点→多表位免疫原”设计范式,为病毒T细胞疫苗提供通用框架。  

 

  技术贡献  
  HTI序列及算法已开源,可移植至HBV、SARS-CoV-2等病毒疫苗设计。  

 

  实际价值  
  HTI已进入I期临床试验(HIVACAT),为首个基于人类功能数据的T细胞疫苗候选。

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