Antibody responses are determined by activated B cells bifurcating into plasmablasts (PBs) and germinal center B cells (GCBCs). Gene regulatory networks (GRNs) underlying human B cell fate choice remain uncharted. Temporally resolved single-cell multi-omics, computational modeling and CRISPR-based perturbations were used to assemble, simulate and test high-resolution GRNs underlying PB and GC fates. The results converged with orthogonal predictions of transcription factor (TF) action at single-nucleotide resolution, revealing dominant and reciprocal actions of IRF4 and its binding partners at simple and composite IRF motifs. Single-cell perturbation analysis of these TFs demonstrated multiple reciprocal negative feedback loops controlling the bifurcation. Additionally, IRF4 and BLIMP1, co-repressed the cell cycle regulators MYC and CCND2. G0/G1 lengthening accelerated the switching of cells to an IRF4(hi)BLIMP1(hi) regulatory state and enhanced the probability of PB specification, thereby uncovering a self-reinforcing regulatory module that couples cell cycle dynamics to B cell fate choice.
Cell cycle-coupled transcriptional network orchestrates human B cell fate bifurcation.
阅读:2
作者:Pease Nicholas A, Fan Jingyu, Keshari Swapnil, Stratton Jered, Gerges Peter, Varghese Betsy Ann, Nampoothiri Narayanan Vp, McGinnis Christopher S, Zhang Wenxi, Gierlack Steven B, Swaminathan Tanush, Sachan Akanksha, Vijay Godhev Manakkat, Hernandez Luis Mena, Rarani Zarifeh Heidari, Macedo Camila, Metes Diana, Satpathy Ansuman T, Jain Abhinav K, Sahni Nidhi, Stallaert Wayne, Das Jishnu, Singh Harinder
期刊: | bioRxiv | 影响因子: | 0.000 |
时间: | 2025 | 起止号: | 2025 Jun 25 |
doi: | 10.1101/2025.04.23.649973 |
特别声明
1、本文转载旨在传播信息,不代表本网站观点,亦不对其内容的真实性承担责任。
2、其他媒体、网站或个人若从本网站转载使用,必须保留本网站注明的“来源”,并自行承担包括版权在内的相关法律责任。
3、如作者不希望本文被转载,或需洽谈转载稿费等事宜,请及时与本网站联系。
4、此外,如需投稿,也可通过邮箱info@biocloudy.com与我们取得联系。