The aim of the present research is the isolation and morphological and molecular-phenological identification of nematophagous fungi of Southern Kazakhstan for the production of effective bionematicides on their basis. Nematophagous fungi, which include nematode-trapping, ovicidal, endoparasitic, toxin-producing, and special substance-producing fungi, are among the most effective biological agents in controlling phytoparasitic nematodes. To isolate and characterize nematophagous fungi, soil samples were collected at 12 sites in three regions of Southern Kazakhstan. The samples were collected using the envelope method. The content of nematophagous fungi in the samples was determined using the standard surface sowing technique. The obtained strains of nematophagous fungi were identified. The attractive and nematophagous activity of the obtained fungal strains was determined by using standard methods. In experiments on the isolation and morphological identification of nematophagous fungi, the nematode species Meloidogyne incognita was used. Identification of the strains was carried out by the method of determining the direct nucleotide sequence of the region of the nuclear ribosomal internal transcribed spacer, followed by determination of nucleotide identity with sequences deposited in the international GeneBank database. As a result, the following species of nematophagous fungi living in the soils of agricultural lands in Southern Kazakhstan were identified: Orbilia oligospora, Duddingtonia flagrans, Orbilia oligospora, and Arthrobotrys superba.