Frizzled5 controls murine intestinal epithelial cell plasticity through organization of chromatin accessibility

Frizzled5通过调控染色质可及性来控制小鼠肠道上皮细胞的可塑性。

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作者:Lu Deng ,Xi C He ,Shiyuan Chen ,Ning Zhang ,Fengyan Deng ,Allison Scott ,Yanfeng He ,Dai Tsuchiya ,Sarah E Smith ,Michael Epp ,Seth Malloy ,Fang Liu ,Mark Hembree ,Qinghui Mu ,Jeffrey S Haug ,Ermanno Malagola ,Huzaifa Hassan ,Kaitlyn Petentler ,Rhonda Egidy ,Lucinda Maddera ,Jonathon Russell ,Yan Wang ,Hua Li ,Chongbei Zhao ,Anoja Perera ,Timothy C Wang ,Calvin J Kuo ,Linheng Li

Abstract

The homeostasis of the intestinal epithelium relies on intricate yet insufficiently understood mechanisms of intestinal epithelial plasticity. Here, we elucidate the pivotal role of Frizzled5 (Fzd5), a Wnt pathway receptor, as a determinant of murine intestinal epithelial cell fate. Deletion of Fzd5 in Lgr5+ intestinal stem cells (ISCs) impairs their self-renewal, whereas its deletion in Krt19+ cells disrupts lineage generation, without affecting crypt integrity in either case. However, a broader deletion of Fzd5 across the epithelium leads to substantial crypt deterioration. Integrated analysis of single-cell RNA sequencing (scRNA-seq) and single-cell ATAC-seq (scATAC-seq) identifies that Fzd5 governs chromatin accessibility, orchestrating the regulation of stem- and lineage-related gene expression mainly in ISCs and progenitor cells. In summary, our findings provide insights into the regulatory role of Fzd5 in governing intestinal epithelial plasticity. Keywords: Fzd5; Wnt pathway; chromatin accessibility; intestinal stem cell; plasticity; single-cell transcriptome and epigenome.

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