Convergent Identification and Interrogation of Tumor-Intrinsic Factors that Modulate Cancer Immunity In Vivo

肿瘤内在因素在体内调节癌症免疫的融合识别与探究

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作者:Adan Codina ,Paul A Renauer ,Guangchuan Wang ,Ryan D Chow ,Jonathan J Park ,Hanghui Ye ,Kerou Zhang ,Matthew B Dong ,Brandon Gassaway ,Lupeng Ye ,Youssef Errami ,Li Shen ,Alan Chang ,Dhanpat Jain ,Roy S Herbst ,Marcus Bosenberg ,Jesse Rinehart ,Rong Fan ,Sidi Chen

Abstract

The genetic makeup of cancer cells directs oncogenesis and influences the tumor microenvironment. In this study, we massively profiled genes that functionally drive tumorigenesis using genome-scale in vivo CRISPR screens in hosts with different levels of immunocompetence. As a convergent hit from these screens, Prkar1a mutant cells are able to robustly outgrow as tumors in fully immunocompetent hosts. Functional interrogation showed that Prkar1a loss greatly altered the transcriptome and proteome involved in inflammatory and immune responses as well as extracellular protein production. Single-cell transcriptomic profiling and flow cytometry analysis mapped the tumor microenvironment of Prkar1a mutant tumors and revealed the transcriptomic alterations in host myeloid cells. Taken together, our data suggest that tumor-intrinsic mutations in Prkar1a lead to drastic alterations in the genetic program of cancer cells, thereby remodeling the tumor microenvironment.

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