Sequence modeling and design from molecular to genome scale with Evo.

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作者:Nguyen Eric, Poli Michael, Durrant Matthew G, Kang Brian, Katrekar Dhruva, Li David B, Bartie Liam J, Thomas Armin W, King Samuel H, Brixi Garyk, Sullivan Jeremy, Ng Madelena Y, Lewis Ashley, Lou Aaron, Ermon Stefano, Baccus Stephen A, Hernandez-Boussard Tina, Ré Christopher, Hsu Patrick D, Hie Brian L
The genome is a sequence that encodes the DNA, RNA, and proteins that orchestrate an organism's function. We present Evo, a long-context genomic foundation model with a frontier architecture trained on millions of prokaryotic and phage genomes, and report scaling laws on DNA to complement observations in language and vision. Evo generalizes across DNA, RNA, and proteins, enabling zero-shot function prediction competitive with domain-specific language models and the generation of functional CRISPR-Cas and transposon systems, representing the first examples of protein-RNA and protein-DNA codesign with a language model. Evo also learns how small mutations affect whole-organism fitness and generates megabase-scale sequences with plausible genomic architecture. These prediction and generation capabilities span molecular to genomic scales of complexity, advancing our understanding and control of biology.

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