Programmable epigenome editing by transient delivery of CRISPR epigenome editor ribonucleoproteins

通过瞬时递送CRISPR表观基因组编辑核糖核蛋白进行可编程表观基因组编辑

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作者:Da Xu #,Swen Besselink #,Gokul N Ramadoss,Philip H Dierks,Justin P Lubin,Rithu K Pattali,Jinna I Brim,Anna E Christenson,Peter J Colias,Izaiah J Ornelas,Carolyn D Nguyen,Sarah E Chasins,Bruce R Conklin,James K Nuñez

Abstract

Programmable epigenome editors modify gene expression in mammalian cells by altering the local chromatin environment at target loci without inducing DNA breaks. However, the large size of CRISPR-based epigenome editors poses a challenge to their broad use in biomedical research and as future therapies. Here, we present Robust ENveloped Delivery of Epigenome-editor Ribonucleoproteins (RENDER) for transiently delivering programmable epigenetic repressors (CRISPRi, DNMT3A-3L-dCas9, CRISPRoff) and activator (TET1-dCas9) as ribonucleoprotein complexes into human cells to modulate gene expression. After rational engineering, we show that RENDER induces durable epigenetic silencing of endogenous genes across various human cell types, including primary T cells. Additionally, we apply RENDER to epigenetically repress endogenous genes in human stem cell-derived neurons, including the reduction of the neurodegenerative disease associated V337M-mutated Tau protein. Together, our RENDER platform advances the delivery of CRISPR-based epigenome editors into human cells, broadening the use of epigenome editing in fundamental research and therapeutic applications.

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