Network-based systems pharmacology reveals heterogeneity in LCK and BCL2 signaling and therapeutic sensitivity of T-cell acute lymphoblastic leukemia

基于网络的系统药理学揭示了LCK和BCL2信号传导的异质性以及T细胞急性淋巴细胞白血病的治疗敏感性

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作者:Yoshihiro Gocho #,Jingjing Liu #,Jianzhong Hu #,Wentao Yang,Neekesh V Dharia,Jingliao Zhang,Hao Shi,Guoqing Du,August John,Ting-Nien Lin,Jeremy Hunt,Xin Huang,Bensheng Ju,Lauren Rowland,Lei Shi,Dylan Maxwell,Brandon Smart,Kristine R Crews,Wenjian Yang,Kohei Hagiwara,Yingchi Zhang,Kathryn Roberts,Hong Wang,Elias Jabbour,Wendy Stock,Bartholomew Eisfelder,Elisabeth Paietta,Scott Newman,Giovanni Roti,Mark Litzow,John Easton,Jinghui Zhang,Junmin Peng,Hongbo Chi,Stanley Pounds,Mary V Relling,Hiroto Inaba,Xiaofan Zhu,Steven Kornblau,Ching-Hon Pui,Marina Konopleva,David Teachey,Charles G Mullighan,Kimberly Stegmaier,William E Evans,Jiyang Yu,Jun J Yang    0

Abstract

T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive hematological malignancy, and novel therapeutics are much needed. Profiling patient leukemia' drug sensitivities ex vivo, we discovered that 44.4% of childhood and 16.7% of adult T-ALL cases exquisitely respond to dasatinib. Applying network-based systems pharmacology analyses to examine signal circuitry, we identified preTCR-LCK activation as the driver of dasatinib sensitivity, and T-ALL-specific LCK dependency was confirmed in genome-wide CRISPR-Cas9 screens. Dasatinib-sensitive T-ALLs exhibited high BCL-XL and low BCL2 activity and venetoclax resistance. Discordant sensitivity of T-ALL to dasatinib and venetoclax is strongly correlated with T-cell differentiation, particularly with the dynamic shift in LCK vs. BCL2 activation. Finally, single-cell analysis identified leukemia heterogeneity in LCK and BCL2 signaling and T-cell maturation stage, consistent with dasatinib response. In conclusion, our results indicate that developmental arrest in T-ALL drives differential activation of preTCR-LCK and BCL2 signaling in this leukemia, providing unique opportunities for targeted therapy.

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