N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2

N端结构域抗原定位揭示了SARS-CoV-2的易感位点

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作者:Matthew McCallum,Anna De Marco,Florian A Lempp,M Alejandra Tortorici,Dora Pinto,Alexandra C Walls,Martina Beltramello,Alex Chen,Zhuoming Liu,Fabrizia Zatta,Samantha Zepeda,Julia di Iulio,John E Bowen,Martin Montiel-Ruiz,Jiayi Zhou,Laura E Rosen,Siro Bianchi,Barbara Guarino,Chiara Silacci Fregni,Rana Abdelnabi,Shi-Yan Caroline Foo,Paul W Rothlauf,Louis-Marie Bloyet,Fabio Benigni,Elisabetta Cameroni,Johan Neyts,Agostino Riva,Gyorgy Snell,Amalio Telenti,Sean P J Whelan,Herbert W Virgin,Davide Corti,Matteo Samuele Pizzuto,David Veesler  0

Abstract

The SARS-CoV-2 spike (S) glycoprotein contains an immunodominant receptor-binding domain (RBD) targeted by most neutralizing antibodies (Abs) in COVID-19 patient plasma. Little is known about neutralizing Abs binding to epitopes outside the RBD and their contribution to protection. Here, we describe 41 human monoclonal Abs (mAbs) derived from memory B cells, which recognize the SARS-CoV-2 S N-terminal domain (NTD) and show that a subset of them neutralize SARS-CoV-2 ultrapotently. We define an antigenic map of the SARS-CoV-2 NTD and identify a supersite (designated site i) recognized by all known NTD-specific neutralizing mAbs. These mAbs inhibit cell-to-cell fusion, activate effector functions, and protect Syrian hamsters from SARS-CoV-2 challenge, albeit selecting escape mutants in some animals. Indeed, several SARS-CoV-2 variants, including the B.1.1.7, B.1.351, and P.1 lineages, harbor frequent mutations within the NTD supersite, suggesting ongoing selective pressure and the importance of NTD-specific neutralizing mAbs for protective immunity and vaccine design.

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