Single-cell RNA sequencing identifies a population of human liver-type ILC1s

单细胞RNA测序鉴定出一群人类肝型ILC1细胞

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作者:Benjamin Krämer,Ansel P Nalin,Feiyang Ma,Sarah Eickhoff,Philipp Lutz,Sonia Leonardelli,Felix Goeser,Claudia Finnemann,Gudrun Hack,Jan Raabe,Michael ToVinh,Sarah Ahmad,Christoph Hoffmeister,Kim M Kaiser,Steffen Manekeller,Vittorio Branchi,Tobias Bald,Michael Hölzel,Robert Hüneburg,Hans Dieter Nischalke,Alexander Semaan,Bettina Langhans,Dominik J Kaczmarek,Brooke Benner,Matthew R Lordo,Jesse Kowalski,Adam Gerhardt,Jörg Timm,Marieta Toma,Raphael Mohr,Andreas Türler,Arthur Charpentier,Tobias van Bremen,Georg Feldmann,Arne Sattler,Katja Kotsch,Ali T Abdallah,Christian P Strassburg,Ulrich Spengler,William E Carson rd,Bethany L Mundy-Bosse,Matteo Pellegrini,Timothy E O'Sullivan,Aharon G Freud,Jacob Nattermann

Abstract

Group 1 innate lymphoid cells (ILCs) comprise a heterogeneous family of cytotoxic natural killer (NK) cells and ILC1s. We identify a population of "liver-type" ILC1s with transcriptional, phenotypic, and functional features distinct from those of conventional and liver-resident NK cells as well as from other previously described human ILC1 subsets. LT-ILC1s are CD49a+CD94+CD200R1+, express the transcription factor T-BET, and do not express the activating receptor NKp80 or the transcription factor EOMES. Similar to NK cells, liver-type ILC1s produce IFN-γ, TNF-α, and GM-CSF; however, liver-type ILC1s also produce IL-2 and lack perforin and granzyme-B. Liver-type ILC1s are expanded in cirrhotic liver tissues, and they can be produced from blood-derived ILC precursors in vitro in the presence of TGF-β1 and liver sinusoidal endothelial cells. Cells with similar signature and function can also be found in tonsil and intestinal tissues. Collectively, our study identifies and classifies a population of human cross-tissue ILC1s.

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