Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodies

亲和力成熟的公共抗体对SARS-CoV-2广泛交叉中和的结构基础

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作者:Daniel J Sheward,Pradeepa Pushparaj,Hrishikesh Das,Allison J Greaney,Changil Kim,Sungyong Kim,Leo Hanke,Erik Hyllner,Robert Dyrdak,Jimin Lee,Xaquin Castro Dopico,Pia Dosenovic,Thomas P Peacock,Gerald M McInerney,Jan Albert,Martin Corcoran,Jesse D Bloom,Ben Murrell,Gunilla B Karlsson Hedestam,B Martin Hällberg

Abstract

Descendants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant now account for almost all SARS-CoV-2 infections. The Omicron variant and its sublineages have spike glycoproteins that are highly diverged from the pandemic founder and first-generation vaccine strain, resulting in significant evasion from monoclonal antibody therapeutics and vaccines. Understanding how commonly elicited antibodies can broaden to cross-neutralize escape variants is crucial. We isolate IGHV3-53, using "public" monoclonal antibodies (mAbs) from an individual 7 months post infection with the ancestral virus and identify antibodies that exhibit potent and broad cross-neutralization, extending to the BA.1, BA.2, and BA.4/BA.5 sublineages of Omicron. Deep mutational scanning reveals these mAbs' high resistance to viral escape. Structural analysis via cryoelectron microscopy of a representative broadly neutralizing antibody, CAB-A17, in complex with the Omicron BA.1 spike highlights the structural underpinnings of this broad neutralization. By reintroducing somatic hypermutations into a germline-reverted CAB-A17, we delineate the role of affinity maturation in the development of cross-neutralization by a public class of antibodies.

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