Diverse immunoglobulin gene usage and convergent epitope targeting in neutralizing antibody responses to SARS-CoV-2

SARS-CoV-2中和抗体反应中免疫球蛋白基因的多样性使用和趋同的表位靶向

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作者:Xiaojuan Zhou,Fengge Ma,Jun Xie,Meng Yuan,Yunqiao Li,Namir Shaabani,Fangzhu Zhao,Deli Huang,Nicholas C Wu,Chang-Chun D Lee,Hejun Liu,Jiali Li,Zhonghui Chen,Yazhen Hong,Wen-Hsien Liu,Nengming Xiao,Dennis R Burton,Haijian Tu,Hang Li,Xin Chen,John R Teijaro,Ian A Wilson,Changchun Xiao,Zhe Huang

Abstract

It is unclear whether individuals with enormous diversity in B cell receptor repertoires are consistently able to mount effective antibody responses against SARS-CoV-2. We analyzed antibody responses in a cohort of 55 convalescent patients and isolated 54 potent neutralizing monoclonal antibodies (mAbs). While most of the mAbs target the angiotensin-converting enzyme 2 (ACE2) binding surface on the receptor binding domain (RBD) of SARS-CoV-2 spike protein, mAb 47D1 binds only to one side of the receptor binding surface on the RBD. Neutralization by 47D1 is achieved independent of interfering RBD-ACE2 binding. A crystal structure of the mAb-RBD complex shows that the IF motif at the tip of 47D1 CDR H2 interacts with a hydrophobic pocket in the RBD. Diverse immunoglobulin gene usage and convergent epitope targeting characterize neutralizing antibody responses to SARS-CoV-2, suggesting that vaccines that effectively present the receptor binding site on the RBD will likely elicit neutralizing antibody responses in a large fraction of the population.

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