Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses

罕见的、趋同的抗体靶向茎螺旋结构,可广泛中和多种β冠状病毒

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作者:Cherrelle Dacon,Linghang Peng,Ting-Hui Lin,Courtney Tucker,Chang-Chun D Lee,Yu Cong,Lingshu Wang,Lauren Purser,Andrew J R Cooper,Jazmean K Williams,Chul-Woo Pyo,Meng Yuan,Ivan Kosik,Zhe Hu,Ming Zhao,Divya Mohan,Mary Peterson,Jeff Skinner,Saurabh Dixit,Erin Kollins,Louis Huzella,Donna Perry,Russell Byrum,Sanae Lembirik,Michael Murphy,Yi Zhang,Eun Sung Yang,Man Chen,Kwanyee Leung,Rona S Weinberg,Amarendra Pegu,Daniel E Geraghty,Edgar Davidson,Benjamin J Doranz,Iyadh Douagi,Susan Moir,Jonathan W Yewdell,Connie Schmaljohn,Peter D Crompton,John R Mascola,Michael R Holbrook,David Nemazee,Ian A Wilson,Joshua Tan

Abstract

Humanity has faced three recent outbreaks of novel betacoronaviruses, emphasizing the need to develop approaches that broadly target coronaviruses. Here, we identify 55 monoclonal antibodies from COVID-19 convalescent donors that bind diverse betacoronavirus spike proteins. Most antibodies targeted an S2 epitope that included the K814 residue and were non-neutralizing. However, 11 antibodies targeting the stem helix neutralized betacoronaviruses from different lineages. Eight antibodies in this group, including the six broadest and most potent neutralizers, were encoded by IGHV1-46 and IGKV3-20. Crystal structures of three antibodies of this class at 1.5-1.75-Å resolution revealed a conserved mode of binding. COV89-22 neutralized SARS-CoV-2 variants of concern including Omicron BA.4/5 and limited disease in Syrian hamsters. Collectively, these findings identify a class of IGHV1-46/IGKV3-20 antibodies that broadly neutralize betacoronaviruses by targeting the stem helix but indicate these antibodies constitute a small fraction of the broadly reactive antibody response to betacoronaviruses after SARS-CoV-2 infection.

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