Single-cell chromatin accessibility landscape identifies tissue repair program in human regulatory T cells

单细胞染色质可及性图谱揭示了人类调节性T细胞中的组织修复程序

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作者:Michael Delacher,Malte Simon,Lieke Sanderink,Agnes Hotz-Wagenblatt,Marina Wuttke,Kathrin Schambeck,Lisa Schmidleithner,Sebastian Bittner,Asmita Pant,Uwe Ritter,Thomas Hehlgans,Dania Riegel,Verena Schneider,Florian Kai Groeber-Becker,Andreas Eigenberger,Claudia Gebhard,Nicholas Strieder,Alexander Fischer,Michael Rehli,Petra Hoffmann,Matthias Edinger,Till Strowig,Jochen Huehn,Christian Schmidl,Jens M Werner,Lukas Prantl,Benedikt Brors,Charles D Imbusch,Markus Feuerer

Abstract

Murine regulatory T (Treg) cells in tissues promote tissue homeostasis and regeneration. We sought to identify features that characterize human Treg cells with these functions in healthy tissues. Single-cell chromatin accessibility profiles of murine and human tissue Treg cells defined a conserved, microbiota-independent tissue-repair Treg signature with a prevailing footprint of the transcription factor BATF. This signature, combined with gene expression profiling and TCR fate mapping, identified a population of tissue-like Treg cells in human peripheral blood that expressed BATF, chemokine receptor CCR8 and HLA-DR. Human BATF+CCR8+ Treg cells from normal skin and adipose tissue shared features with nonlymphoid T follicular helper-like (Tfh-like) cells, and induction of a Tfh-like differentiation program in naive human Treg cells partially recapitulated tissue Treg regenerative characteristics, including wound healing potential. Human BATF+CCR8+ Treg cells from healthy tissue share features with tumor-resident Treg cells, highlighting the importance of understanding the context-specific functions of these cells.

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