LAC-TME classifier: machine learning-driven model predicts survival and prioritizes targeted therapy in clear cell renal cell carcinoma

LAC-TME分类器:基于机器学习的模型预测透明细胞肾细胞癌患者的生存期并确定靶向治疗的优先顺序

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作者:Jiawei He #,Lin Qi #,Yi Cai,Minfeng Chen,Yinzhao Wang

Abstract

Background: Clear cell renal cell carcinoma (ccRCC) is a major type of kidney cancer, making up about 80% of cases, with advanced stages showing low survival rates. Current treatments face challenges like toxicity and drug resistance. Studies indicate lactate, through the Warburg effect, promotes an immune-suppressive tumor microenvironment (TME), prompting the development of the LAC-TME classifier using machine learning to predict outcomes and personalize treatment. Methods: The study used data from TCGA-KIRC set and E-MTAB-1980 set, analyzing gene expression, mutations, and clinical data. It employed differential expression analysis, immune infiltration assessment, and 101 machine learning algorithms to build the classifier, integrating lactate-related genes and TME features, with predictive capability verified. Results: The LAC-TME classifier, constructed by integrating 9 lactate-related differentially expressed genes and TME cells, demonstrated high predictive accuracy (C-index of 0.92 in the training set and 0.73 in the validation set). Patients were categorized into three groups: Lactatelow + TMElow (best prognosis), Lactatehigh + TMEhigh (poorest prognosis), and a mixed group. This classifier can predict 1- to 5-year survival rates, with an AUC of 0.88-0.92. Notably, the Lactatehigh + TMEhigh subgroup was associated with immunosuppression and poor response to immunotherapy. As the core lactate-related gene of the LAC-TME classifier, the knockdown of LGALS1 significantly inhibits the proliferation and migration of ccRCC cells, verifying the biological rationality of the classifier. Conclusion: The LAC-TME classifier, integrating metabolic and immune data, offers a new tool for ccRCC prognosis and treatment guidance. Further validation is needed to confirm its clinical potential, reflecting the ongoing need for robust medical research.

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