Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains

从地层水中分离和鉴定原油降解菌:环境分离株与临床菌株的中间赭色杆菌的比较基因组分析

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作者:Lu-jun Chai,Xia-wei Jiang,Fan Zhang,Bei-wen Zheng,Fu-chang Shu,Zheng-liang Wang,Qing-feng Cui,Han-ping Dong,Zhong-zhi Zhang,Du-jie Hou,Yue-hui She

Abstract

In this study, we isolated an environmental clone of Ochrobactrum intermedium, strain 2745-2, from the formation water of Changqing oilfield in Shanxi, China, which can degrade crude oil. Strain 2745-2 is aerobic and rod-shaped with optimum growth at 42 °C and pH 5.5. We sequenced the genome and found a single chromosome of 4 800 175 bp, with a G+C content of 57.63%. Sixty RNAs and 4737 protein-coding genes were identified: many of the genes are responsible for the degradation, emulsification, and metabolizing of crude oil. A comparative genomic analysis with related clinical strains (M86, 229E, and LMG3301(T)) showed that genes involved in virulence, disease, defense, phages, prophages, transposable elements, plasmids, and antibiotic resistance are also present in strain 2745-2.

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