Genome- and metabolome-guided discovery of marine BamA inhibitors revealed a dedicated darobactin halogenase

基因组和代谢组指导的海洋 BamA 抑制剂发现揭示了一种特异性的达罗巴汀卤化酶

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作者:Nils Böhringer,Jil-Christine Kramer,Eugenio de la Mora,Leo Padva,Zerlina G Wuisan,Yang Liu,Michael Kurz,Michael Marner,Hai Nguyen,Patricia Amara,Kenichi Yokoyama,Yvain Nicolet,Ute Mettal,Till F Schäberle

Abstract

Darobactins represent a class of ribosomally synthesized and post-translationally modified peptide (RiPP) antibiotics featuring a rare bicyclic structure. They target the Bam-complex of Gram-negative bacteria and exhibit in vivo activity against drug-resistant pathogens. First isolated from Photorhabdus species, the corresponding biosynthetic gene clusters (BGCs) are widespread among γ-proteobacteria, including the genera Vibrio, Yersinia, and Pseudoalteromonas (P.). While the organization of the BGC core is highly conserved, a small subset of Pseudoalteromonas carries an extended BGC with additional genes. Here, we report the identification of brominated and dehydrated darobactin derivatives from P. luteoviolacea strains. The marine derivatives are active against multidrug-resistant (MDR) Gram-negative bacteria and showed solubility and plasma protein binding ability different from darobactin A, rendering it more active than darobactin A. The halogenation reaction is catalyzed by DarH, a new class of flavin-dependent halogenases with a novel fold.

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