Shallow whole genome sequencing approach to detect Homologous Recombination Deficiency in the PAOLA-1/ENGOT-OV25 phase-III trial

在 PAOLA-1/ENGOT-OV25 III 期试验中,采用浅层全基因组测序方法检测同源重组缺陷

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作者:Celine Callens ,Manuel Rodrigues ,Adrien Briaux ,Eleonore Frouin ,Alexandre Eeckhoutte ,Eric Pujade-Lauraine ,Victor Renault ,Dominique Stoppa-Lyonnet ,Ivan Bieche ,Guillaume Bataillon ,Lucie Karayan-Tapon ,Tristan Rochelle ,Florian Heitz ,Sabrina Chiara Cecere ,Maria Jesús Rubio Pérez ,Christoph Grimm ,Trine Jakobi Nøttrup ,Nicoletta Colombo ,Ignace Vergote ,Kan Yonemori ,Isabelle Ray-Coquard ,Marc-Henri Stern ,Tatiana Popova

Abstract

The bevacizumab (bev)/olaparib (ola) maintenance regimen was approved for BRCA1/2-mutated (BRCAmut) and Homologous Recombination Deficient (HRD) high-grade Advanced Ovarian Cancer (AOC) first line setting, based on a significantly improved progression-free survival (PFS) compared to bev alone in the PAOLA-1/ENGOT-ov25 trial (NCT02477644), where HRD was detected by MyChoice CDx PLUS test. The academic shallowHRDv2 test was developed based on shallow whole-genome sequencing as an alternative to MyChoice. Analytical and clinical validities of shallowHRDv2 as compared to MyChoice on 449 PAOLA-1 tumor samples are presented. The overall agreement between shallowHRDv2 and MyChoice was 94% (369/394). Less non-contributive tests were observed with shallowHRDv2 (15/449; 3%) than with MyChoice (51/449; 11%). Patients with HRD tumors according to shallowHRDv2 (including BRCAmut) showed a significantly prolonged PFS with bev+ola versus bev (median PFS: 65.7 versus 20.3 months, hazard ratio (HR): 0.36 [95% CI: 0.24-0.53]). This benefit was significant also for BRCA1/2 wild-type tumors (40.8 versus 19.5 months, HR: 0.45 [95% CI: 0.26-0.76]). ShallowHRDv2 is a performant, clinically validated, and cost-effective test for HRD detection.

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