Paired heavy- and light-chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses

重链和轻链配对特征有助于在公共抗体反应中有效中和 SARS-CoV-2

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作者:Bailey B Banach, Gabriele Cerutti, Ahmed S Fahad, Chen-Hsiang Shen, Matheus Oliveira De Souza, Phinikoula S Katsamba, Yaroslav Tsybovsky, Pengfei Wang, Manoj S Nair, Yaoxing Huang, Irene M Francino-Urdániz, Paul J Steiner, Matías Gutiérrez-González, Lihong Liu, Sheila N López Acevedo, Alexandra F Na

Abstract

Understanding mechanisms of protective antibody recognition can inform vaccine and therapeutic strategies against SARS-CoV-2. We report a monoclonal antibody, 910-30, targeting the SARS-CoV-2 receptor-binding site for ACE2 as a member of a public antibody response encoded by IGHV3-53/IGHV3-66 genes. Sequence and structural analyses of 910-30 and related antibodies explore how class recognition features correlate with SARS-CoV-2 neutralization. Cryo-EM structures of 910-30 bound to the SARS-CoV-2 spike trimer reveal binding interactions and its ability to disassemble spike. Despite heavy-chain sequence similarity, biophysical analyses of IGHV3-53/3-66-encoded antibodies highlight the importance of native heavy:light pairings for ACE2-binding competition and SARS-CoV-2 neutralization. We develop paired heavy:light class sequence signatures and determine antibody precursor prevalence to be ∼1 in 44,000 human B cells, consistent with public antibody identification in several convalescent COVID-19 patients. These class signatures reveal genetic, structural, and functional immune features that are helpful in accelerating antibody-based medical interventions for SARS-CoV-2.

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