Total RNA and MicroRNA Transcriptomic Responses of Human Retinal Müller Glial Cells to Infection with Toxoplasma gondii Tachyzoites

人视网膜穆勒胶质细胞对弓形虫速殖子感染的总RNA和microRNA转录组反应

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Abstract

PURPOSE: Ocular toxoplasmosis, caused by infection with Toxoplasma gondii, is characterized by retinal necrosis and reactive intraocular inflammation. Müller glial cells are a principal retinal host cell population for T. gondii. The goal of this research was to delineate potential involvements of Müller glial cells in ocular toxoplasmosis at a molecular level. DESIGN: Laboratory-based study. SAMPLES: Human retinal Müller glial cells infected with T. gondii plus noninfected cells. METHODS: Monolayers of Müller glial cells isolated from human retina (6 donor eye pairs) were infected for 24 hours with GT1 or GPHT strain T. gondii tachyzoites (multiplicity of infection of 5), or incubated in parallel without infection. Total RNA and small RNA were extracted from cell monolayers, sequenced on the Illumina NovaSeq 6000 and NextSeq 550 platforms, respectively, and aligned to GRCh38. Transcriptomic responses to infection with each strain were compared for differential expression (false discovery rate <5% and twofold change). These data were interrogated for enrichment of Reactome and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and Gene Ontology in InnateDB; putative transcription factor binding sites in HOMER; and potential microRNA-mRNA interactions in multiMiR. MAIN OUTCOME MEASURES: Total and small RNA transcriptomes. RESULTS: 6.3% of total RNA and 2.4% of small RNA changed in GT1-infected cells (582 upregulated and 210 downregulated transcripts and 20 upregulated microRNAs) versus 4.3% of total RNA and 1.5% of small RNA in GPHT-infected cells (400 upregulated and 137 downregulated transcripts and 12 upregulated microRNAs). Seventy-six transcripts and 4 microRNAs were different between strains; most were increased by both, but GT1 induced higher levels than GPHT. Enriched pathways and ontologies were dominated by DNA replication and intracellular metabolic activities, and the immune response for GT1 and GPHT. Seven of 8 transcription factor binding sites were shared for GT1 and GPHT infections, all overexpressed, including sites for p65/RELA and E2F family members. Across the strains, miR-18a-5p was the most connected microRNA in predicted mRNA target networks. CONCLUSIONS: This work demonstrates that human retinal Müller glial cells shift to a proliferative and inflammatory phenotype when infected with T. gondii tachyzoites, consistent with a central role in the characteristic pathology of ocular toxoplasmosis. FINANCIAL DISCLOSURES: Proprietary or commercial disclosure may be found in the Footnotes and Disclosures at the end of this article.

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