A novel cell-permeable, selective, and noncompetitive inhibitor of KAT3 histone acetyltransferases from a combined molecular pruning/classical isosterism approach

一种新型的细胞通透性、选择性、非竞争性的 KAT3 组蛋白乙酰转移酶抑制剂,通过分子修剪/经典电子等排方法合成

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作者:Ciro Milite, Alessandra Feoli, Kazuki Sasaki, Valeria La Pietra, Amodio Luca Balzano, Luciana Marinelli, Antonello Mai, Ettore Novellino, Sabrina Castellano, Alessandra Tosco, Gianluca Sbardella

Abstract

Selective inhibitors of the two paralogue KAT3 acetyltransferases (CBP and p300) may serve not only as precious chemical tools to investigate the role of these enzymes in physiopathological mechanisms but also as lead structures for the development of further antitumor agents. After the application of a molecular pruning approach to the hardly optimizable and not very cell-permeable garcinol core structure, we prepared many analogues that were screened for their inhibitory effects using biochemical and biophysical (SPR) assays. Further optimization led to the discovery of the benzylidenebarbituric acid derivative 7h (EML425) as a potent and selective reversible inhibitor of CBP/p300, noncompetitive versus both acetyl-CoA and a histone H3 peptide, and endowed with good cell permeability. Furthermore, in human leukemia U937 cells, it induced a marked and time-dependent reduction in the acetylation of lysine H4K5 and H3K9, a marked arrest in the G0/G1 phase and a significant increase in the hypodiploid nuclei percentage.

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