Abstract
INTRODUCTION: Tobacco growers usually face particular challenges in predicting the risks of tobacco root diseases due to complex pathogenesis, concealed early symptoms, and heterogeneous farm conditions. METHODS: To address this problem, we proposed a flexible Probabilistic Hybrid Temporal Fusion Network with Random Period Mask (PHTFNet-RPM). This model is designed to forecast future multi-day disease incidences and indices. It incorporates a hybrid input structure with RPM to handle configurable static management variables and time-series data of weather factors and disease metrics, using the RPM to simulate diverse absences of historical observations. The model's internal hierarchically aggregated modules learn cross-variable and cross-temporal feature representations to model the complex non-linear relationships. Furthermore, probabilistic theory-based uncertainty quantification is designed to enhance the model's credibility and reliability. RESULTS: The proposed PHTFNet-RPM was validated using a large-scale time-series dataset of tobacco root diseases, organized from 20-year meteorological and disease survey records in Chuxiong Prefecture, Yunnan Province. Extensive comparative experiments demonstrated that our model achieves a 4.44%-16.43% lower mean absolute error (MAE) than existing models (including LR, SVR, CNN-LSTM, and LSTM-Attention). DISCUSSION: The results confirm that the model can reliably forecast disease progression trends under different configurations, even when relying solely on historical weather observations. The integration of uncertainty quantification provides a robust tool for assessing prediction reliability, offering significant practical value for disease management.