The gene panel with methylation-related genes and clinical factors for predicting overall survival of endometrial cancer

包含甲基化相关基因和临床因素的基因组组合用于预测子宫内膜癌患者的总体生存率

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Abstract

BACKGROUND: This study aimed to identify novel methyla-tion-based prognostic biomarkers for endometrial cancer (EC) to facilitate early diagnosis and treatment. To explore methylation-related prognostic markers in endometrial tis-sue by analyzing TCGA data and to establish a methylation-based risk model for EC patients. METHODS: We systematically analyzed methylation-related gene expression and prognostic significance in 409 EC patients using TCGA DNA methylation data. DNA methy-lation biomarkers were identified through consensus clus-tering and weighted gene co-expression network analysis (WGCNA). The clusterProfiler algorithm was employed to determine key signaling pathways across different sub-groups. A gene panel targeting critical DNA methylation sites was subsequently constructed. RESULTS: A methylation-related prognostic risk model was developed, incorporating five CpG sites: cg01416891, cg00082235, cg01493517,cg03811891,and cg05317207. The model demonstrated strong predictive performance, with high-risk patients exhibiting significantly poorer prog-noses compared to low-risk patients. A gene panel was also established to predict prognosis across different EC risk groups. CONCLUSIONS: The methylation-related gene panel model serves as a reliable prognostic biomarker for EC, offering potential for enhanced early diagnosis and personalized treatment strategies.

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