A multilocus DNA mini-barcode assay to identify twenty vertebrate wildlife species

多位点 DNA 微型条形码检测用于识别二十种脊椎动物野生动物

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作者:Xueyuan Liu, Weian Du, Chen Wang, Yajiang Wu, Wu Chen, Yangyang Zheng, Mengge Wang, Hong Liu, Qianyong Yang, Shui Qian, Ling Chen, Chao Liu

Abstract

The world faces significant challenges in preserving the diversity of vertebrate species due to wildlife crimes. DNA barcoding, an effective molecular marker for insufficient nuclear DNA, is an authentic and quick identification technique to trace the origin of seized samples in forensic investigations. Here, we present a multiplex assay capable of identifying twenty vertebrate wildlife species utilizing twenty species-specific primers that target short fragments of the mitochondrial Cyt b, COI, 16S rRNA, and 12S rRNA genes. The assay achieved strong species specificity and sensitivity with a detection limit as low as 5 pg of DNA input. Additionally, it effectively discriminated a minor contributor (≥1%) from binary mixtures and successfully identified of noninvasive samples, inhibited DNA samples, artificially degraded DNA samples, and case samples, demonstrating a sensitive, robust, practical and easily interpretable tool in screening, and investigating forensic wildlife crimes.

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