Discrimination of three types of homopolymers in single-stranded DNA with solid-state nanopores through external control of the DNA motion

通过外部控制 DNA 运动来区分具有固态纳米孔的单链 DNA 中的三种同聚物

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作者:Rena Akahori, Itaru Yanagi, Yusuke Goto, Kunio Harada, Takahide Yokoi, Ken-Ichi Takeda

Abstract

To achieve DNA sequencing with solid-state nanopores, the speed of the DNA in the nanopore must be controlled to obtain sequence-specific signals. In this study, we fabricated a nanopore-sensing system equipped with a DNA motion controller. DNA strands were immobilized on a Si probe, and approach of this probe to the nanopore vicinity could be controlled using a piezo actuator and stepper motor. The area of the Si probe was larger than the area of the membrane, which meant that the immobilized DNA could enter the nanopore without the need for the probe to scan to determine the location of the nanopore in the membrane. We demonstrated that a single-stranded DNA could be inserted into and removed from a nanopore in our experimental system. The number of different ionic-current levels observed while DNA remained in the nanopore corresponded to the number of different types of homopolymers in the DNA.

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