How many characters are needed to reconstruct a phylogeny?

重建系统发育树需要多少个字符?

阅读:1

Abstract

Despite increased recent attention towards Bayesian phylogenetics and its applications in understanding macroevolutionary processes, it remains unclear how many discrete characters are needed to accurately estimate tree topologies in a Bayesian framework. This could be particularly relevant for morphological datasets used in phylogenetics, as they usually consist of few dozens to few hundreds of characters-orders of magnitude smaller than most molecular datasets. I designed a simulation study in the software RevBayes to explore how the number of sampled discrete characters affects accuracy and precision of Bayesian phylogenetic estimates, under various set-ups differing in number of taxa, average number of state changes per character (i.e. tree length) and number of states per character. Results indicate that between 100 and 500 variable characters are necessary to reach sufficient accuracy and precision of phylogenetic estimates for as low as 20 tips. All other parameters being equal, multistate characters produce slightly more accurate estimates than binary characters and more labile characters produce more accurate estimates for trees above 50 tips. The results of this study highlight the continuous need for global research efforts geared towards the characterization and digitization of interspecific morphological diversity in both extant and extinct taxa.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。