Extracellular circular RNA profiles in plasma and urine of healthy, male college athletes

健康男性大学生运动员血浆和尿液中细胞外环状RNA的分布

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作者:Elizabeth Hutchins ,Rebecca Reiman ,Joseph Winarta ,Taylor Beecroft ,Ryan Richholt ,Matt De Both ,Khalouk Shahbander ,Elizabeth Carlson ,Alex Janss ,Ashley Siniard ,Chris Balak ,Ryan Bruhns ,Timothy G Whitsett ,Roger McCoy ,Matthew Anastasi ,April Allen ,Brian Churas ,Matthew Huentelman ,Kendall Van Keuren-Jensen

Abstract

Circular RNA (circRNA) are a recently discovered class of RNA characterized by a covalently-bonded back-splice junction. As circRNAs are inherently more stable than other RNA species, they may be detected extracellularly in peripheral biofluids and provide novel biomarkers. While circRNA have been identified previously in peripheral biofluids, there are few datasets for circRNA junctions from healthy controls. We collected 134 plasma and 114 urine samples from 54 healthy, male college athlete volunteers, and used RNASeq to determine circRNA content. The intersection of six bioinformatic tools identified 965 high-confidence, characteristic circRNA junctions in plasma and 72 in urine. Highly-expressed circRNA junctions were validated by qRT-PCR. Longitudinal samples were collected from a subset, demonstrating circRNA expression was stable over time. Lastly, the ratio of circular to linear transcripts was higher in plasma than urine. This study provides a valuable resource for characterization of circRNA in plasma and urine from healthy volunteers, one that can be developed and reassessed as researchers probe the circRNA contents of biofluids across physiological changes and disease states.

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