Abstract
The impact of environmental change and anthropogenic stressors on coastal marine systems will strongly depend on changes in the magnitude and composition of organic matter exported from the water column to the seafloor. Knowledge of vertical export in the Baltic Sea is synthesised to illustrate how organic matter deposition will respond to climate warming, climate-related changes in freshwater runoff, and ocean acidification. Pelagic heterotrophic processes are suggested to become more important in a future warmer climate, with negative feedbacks to organic matter deposition to the seafloor. This is an important step towards improved oxygen conditions in the near-bottom layer that will reduce the release of inorganic nutrients from the sediment and hence counteract further eutrophication. The evaluation of these processes in ecosystem models, validated by field observations, will significantly advance the understanding of the system's response to environmental change and will improve the use of such models in management of coastal areas.