Genomic Insights into the First Emergence of bla(NDM-5)-Carrying Carbapenem-Resistant Salmonella enterica Serovar London Strain in China

中国首次出现携带 bla(NDM-5) 基因的耐碳青霉烯类沙门氏菌伦敦血清型菌株的基因组学研究

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Abstract

Carbapenem-resistant Salmonella enterica (S. enterica) pose a significant threat to public health, causing gastroenteritis and invasive infections. We report the first emergence of a carbapenem-resistant S. enterica serovar London strain, A132, carrying the bla(NDM-5) gene in China. Whole-genome sequencing and bioinformatics analysis assigned A132 to be ST155, a multidrug-resistant clone frequently reported in China. The strain A132 exhibited resistance to multiple antibiotics, with 20 acquired antibiotic resistance genes (ARGs) identified, predominantly located on the IncFIB plasmid (pA132-1-NDM). Notably, the bla(NDM-5) gene was located within an IS26 flanked-class 1 integron-ISCR1 complex, comprising two genetic cassettes. One cassette is the class 1 integron, which may facilitate the transmission of the entire complex, while the other is the bla(NDM-5)-containing ISCR1-IS26-flanked cassette, carrying multiple other ARGs. Genbank database search based on the bla(NDM-5)-carrying cassette identified a similar genetic context found in transmissible IncFIA plasmids from Escherichia coli (p91) and Enterobacter hormaechei (p388) with a shared host range, suggesting the potential for cross-species transmission of bla(NDM-5). To our knowledge, this is the first reported case of Salmonella serovar London ST155 harboring bla(NDM-5) gene. Phylogenetic analysis indicated a close relationship between A132 and eight S. London ST155 strains isolated from the same province. However, A132 differed by carrying the bla(NDM-5) gene and four unique ARGs. Given the high transmissibility of the F-type plasmid harboring bla(NDM-5) and 18 other ARGs, it is imperative to implement vigilant surveillance and adopt appropriate infection control measures to mitigate the threat to public health.

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