Single-cell RNA sequencing identifies a population of human liver-type ILC1s

单细胞RNA测序鉴定出一群人类肝型ILC1细胞

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作者:Benjamin Krämer ,Ansel P Nalin ,Feiyang Ma ,Sarah Eickhoff ,Philipp Lutz ,Sonia Leonardelli ,Felix Goeser ,Claudia Finnemann ,Gudrun Hack ,Jan Raabe ,Michael ToVinh ,Sarah Ahmad ,Christoph Hoffmeister ,Kim M Kaiser ,Steffen Manekeller ,Vittorio Branchi ,Tobias Bald ,Michael Hölzel ,Robert Hüneburg ,Hans Dieter Nischalke ,Alexander Semaan ,Bettina Langhans ,Dominik J Kaczmarek ,Brooke Benner ,Matthew R Lordo ,Jesse Kowalski ,Adam Gerhardt ,Jörg Timm ,Marieta Toma ,Raphael Mohr ,Andreas Türler ,Arthur Charpentier ,Tobias van Bremen ,Georg Feldmann ,Arne Sattler ,Katja Kotsch ,Ali T Abdallah ,Christian P Strassburg ,Ulrich Spengler ,William E Carson 3rd ,Bethany L Mundy-Bosse ,Matteo Pellegrini ,Timothy E O'Sullivan ,Aharon G Freud ,Jacob Nattermann

Abstract

Group 1 innate lymphoid cells (ILCs) comprise a heterogeneous family of cytotoxic natural killer (NK) cells and ILC1s. We identify a population of "liver-type" ILC1s with transcriptional, phenotypic, and functional features distinct from those of conventional and liver-resident NK cells as well as from other previously described human ILC1 subsets. LT-ILC1s are CD49a+CD94+CD200R1+, express the transcription factor T-BET, and do not express the activating receptor NKp80 or the transcription factor EOMES. Similar to NK cells, liver-type ILC1s produce IFN-γ, TNF-α, and GM-CSF; however, liver-type ILC1s also produce IL-2 and lack perforin and granzyme-B. Liver-type ILC1s are expanded in cirrhotic liver tissues, and they can be produced from blood-derived ILC precursors in vitro in the presence of TGF-β1 and liver sinusoidal endothelial cells. Cells with similar signature and function can also be found in tonsil and intestinal tissues. Collectively, our study identifies and classifies a population of human cross-tissue ILC1s.

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