Abstract
The Chowan River flows from southern Virginia through northeastern North Carolina and into the Albemarle Sound, a part of the second largest U.S. estuary. The Chowan, which serves as an important recreational area and provides critical nursery habitat for multiple vulnerable species, has garnered much attention in recent years due to recurrent cyanobacterial harmful algal blooms (cHABs) associated with microcystins (MCs). Here we document unprecedented toxic blooms of Microcystis spp. during summer and fall of 2019 with MC concentrations two to three orders above the recreational guidelines of the Environmental Protection Agency (EPA, 2019). Based on 16S sequencing results in this study and previously published reports, the genus Microcystis emerged as a primary concern within the region. Shifts in assemblage composition, including relative abundance of Microcystis spp. and contributions from potential MC-degraders, linked to overall toxin concentrations and bloom stage. Congeners of varying toxicity, mainly MC-RR and MC-LR, were the most prevalent, corroborating that congeners other than MC-LR should be considered as health risk guidelines are developed. Downstream toxin transport was indicated based on changes in accumulated dissolved MC within the western Albemarle Sound which matched toxin dynamics in the Chowan River. This study provides important novel data on bacterial community composition, MC dynamics, and spatial connectivity for the Chowan River region that can aid monitoring approaches and management strategies for the protection of public health along the Chowan River and within the western Albemarle Sound.