Construction of a glycolysis-related diagnostic model for osteoarthritis through integrated bioinformatics analysis and machine learning

通过整合生物信息学分析和机器学习构建与糖酵解相关的骨关节炎诊断模型

阅读:1

Abstract

BACKGROUND: Osteoarthritis (OA) is a prevalent degenerative joint disease that significantly contributes to global disability. Glycolysis, a fundamental process in cellular energy metabolism, is particularly vital for chondrocytes in OA. This study aims to explore the intrinsic relationship between glycolysis-related genes (GRGs) and OA. METHODS: We incorporated three publicly available datasets from the Gene Expression Omnibus (GEO) database, which included 64 OA samples and 34 normal controls. By utilizing differential expression analysis, weighted gene co-expression network analysis, protein-protein interaction networks, and machine learning methods, we identified three diagnostic biomarkers of OA patients. The expression levels of these biomarkers were validated by quantitative reverse transcription polymerase chain reaction (qRT-PCR) and immunohistochemical (IHC). Additionally, a competing endogenous RNA (ceRNA) network was constructed to explore potential regulatory interactions. RESULTS: Through bioinformatics and machine learning approaches, three glycolysis-related biomarkers-HMGB2, SLC7A5, and ADM-were identified. The diagnostic model based on these GRGs demonstrated high predictive accuracy, with an AUC of 0.92 in the training set and 0.85 in the validation set. Subsequently, qRT-PCR and IHC confirmed the differential expression of hub genes in human cartilage samples. Furthermore, immunocyte infiltration analysis revealed distinct immune cell infiltration profiles between OA and HC groups. Notably, lncRNA XIST was found to regulate all three biomarkers, indicating its potential as a therapeutic target for OA. CONCLUSION: This study provides novel insights into the role of glycolysis in OA pathogenesis and highlights its potential as a target for diagnosis, prevention, and treatment strategies.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。