Multi-omics staging of locally advanced rectal cancer predicts treatment response: a pilot study

局部晚期直肠癌的多组学分期预测治疗反应:一项初步研究

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作者:Ilaria Cicalini, Antonio Maria Chiarelli, Piero Chiacchiaretta, David Perpetuini, Consuelo Rosa, Domenico Mastrodicasa, Martina d'Annibale, Stefano Trebeschi, Francesco Lorenzo Serafini, Giulio Cocco, Marco Narciso, Antonio Corvino, Sebastiano Cinalli, Domenico Genovesi, Paola Lanuti, Silvia Valenti

Abstract

Treatment response assessment of rectal cancer patients is a critical component of personalized cancer care and it allows to identify suitable candidates for organ-preserving strategies. This pilot study employed a novel multi-omics approach combining MRI-based radiomic features and untargeted metabolomics to infer treatment response at staging. The metabolic signature highlighted how tumor cell viability is predictively down-regulated, while the response to oxidative stress was up-regulated in responder patients, showing significantly reduced oxoproline values at baseline compared to non-responder patients (p-value < 10-4). Tumors with a high degree of texture homogeneity, as assessed by radiomics, were more likely to achieve a major pathological response (p-value < 10-3). A machine learning classifier was implemented to summarize the multi-omics information and discriminate responders and non-responders. Combining all available radiomic and metabolomic features, the classifier delivered an AUC of 0.864 (± 0.083, p-value < 10-3) with a best-point sensitivity of 90.9% and a specificity of 81.8%. Our results suggest that a multi-omics approach, integrating radiomics and metabolomic data, can enhance the predictive value of standard MRI and could help to avoid unnecessary surgical treatments and their associated long-term complications.

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