Identification of testis development-related genes by combining Iso-Seq and RNA-Seq in Zeugodacus tau

结合 Iso-Seq 和 RNA-Seq 鉴定 Zeugodacus tau 睾丸发育相关基因

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作者:Peipei Liu, Ziniu Li, Qiuyuan Zhang, Jiao Qiao, Chenjun Zheng, Wenping Zheng, Hongyu Zhang

Discussion

Our data indicated that rdh12-like, pdxk, rgn, and inx2 genes were related to testis development, and they were conserved in tephritid species. These results suggested that this gene might have the same function in tephritid. The findings provide an insight into testis development and spermatogenesis in tephritid species.

Methods

Differentially expressed genes (DEGs) during testis development were analyzed by PacBio Iso-Seq and RNA-seq.

Results

RNA-Seq library of Z. tau testes on day 1, 6, and 11 post eclosion were constructed. We identified 755 and 865 differentially expressed genes in the comparisons of T6 (testes on day 6) vs. T1 and T11 vs. T1, respectively. The KEGG pathway analysis showed that the DEGs were significantly enriched in retinol metabolism, vitamin B6 metabolism, and ascorbate and aldarate metabolism pathways. Knockdown of retinol dehydrogenase 12-like (rdh12-like), pyridoxal kinase (pdxk) and regucalcin (rgn), the representative gene in each of the above 3 pathways, reduced the hatching rate of Z. tau offspring. In addition, we identified 107 Drosophila spermatogenesis-related orthologous genes in Z. tau, of which innexin 2 (inx2) exhibited significantly up-regulated expression throughout testis development, and the knockdown of this gene reduced offspring hatching rate.

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