Integrated network pharmacology, docking, MD simulations, and post-MD energy calculation revealed the nootropic effect of Toddalia asiatica

整合网络药理学、分子对接、分子动力学模拟和分子动力学模拟后能量计算揭示了托达利亚(Toddalia asiatica)的促智作用。

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Abstract

Cognitive disorders, such as Alzheimer's disease and Parkinson's disease, are a growing global health concern with limited effective treatments. Traditional medicine has increasingly gained attention for its therapeutic potential, particularly in neuroprotection, with Toddalia asiatica being a promising candidate for cognitive enhancement. This study explores the nootropic potential of T. asiatica using an integrated approach combining network pharmacology, molecular docking, molecular dynamics (MD) simulations, and post-MD energy calculation. Phytoconstituents from T. asiatica were identified and ADMET screening, with 17 bioactive compounds selected for further analysis. Molecular targets were predicted, revealing 47 overlapping targets between T. asiatica compounds and nootropic-related genes. Network analysis highlighted key targets such as MAPK1 and PTGS2 crucial in neuroprotection and cognition. Docking simulations demonstrated that several T. asiatica compounds bind MAPK1 and PTGS2 with favorable affinities. 8-Hydroxybergapten showed a moderate affinity for MAPK1 (- 6.7 kcal/mol, weaker than the co-crystal ligand at - 9.6 kcal/mol) but a stronger binding score for PTGS2 (- 8.5 kcal/mol), exceeding the co-crystal ligand (- 6.9 kcal/mol). MD simulations confirmed the stability of the complex formed by 8-Hydroxybergapten and PTGS2, with favorable binding energies. This study suggests that T. asiatica compounds may offer significant neuroprotective effects, making them viable candidates for developing cognitive-enhancing therapeutics. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s40203-025-00427-0.

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