Analysis of Genomic and Characterization Features of Microbulbifer weihaiensis sp. nov., Isolated from Coastal Sediment

从沿海沉积物中分离得到的威海微球菌(Microbulbifer weihaiensis sp. nov.)的基因组和特征分析

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Abstract

A strictly aerobic, straight-rod, motile Gram-negative bacterium, SDUM041083(T), was isolated from marine sediment in Xiaoshidao, Weihai, China, in the formation of yellowish-brown colonies. Its growing conditions are as follows: 20-40 °C, pH 5.5-9.5, and 0.5-11% (w/v) NaCl. Phylogenetic analysis of the 16S rRNA gene sequence showed that SDUM041083(T) was related to members of the genus Microbulbifer. Strain SDUM041083(T) showed the highest 16S rRNA gene sequence similarity (98.23%) with Microbulbifer okinawensis JCM 16147(T). The primary cellular fatty acids of SDUM041083(T) were iso-C11:0 3-OH, iso-C11:0, and iso-C15:0. The respiratory quinone of SDUM041083(T) was Q-8, and the polar lipids were phosphatidylglycerol, phosphatidylethanolamine, and one aminolipid. The genomic DNA G+C content of SDUM041083(T) was 57.5 mol%. The phenotypic and genotypic characteristics of SDUM041083(T) indicate that the strain should be classified as a new species representing the genus Microbulbifer, with the name Microbulbifer weihaiensis sp. nov. being proposed. The type strain was SDUM041083(T) (=KCTC 8896(T) = MCCC 1H01537(T)). Comparative genomic analysis showed that the 32 Microbulbifer species shared 1446 core genes and differed mainly in terms of lipid metabolism, signal transduction and xenobiotic biodegradation and metabolism. Preliminary research showed that SDUM041083(T) has the potential to degrade chitin. Biogeographic distribution analysis showed that the marine environments constitute the main habitat of the genus Microbulbifer.

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