Molecular determinants and mechanism for antibody cocktail preventing SARS-CoV-2 escape

抗体鸡尾酒疗法预防 SARS-CoV-2 逃逸的分子决定因素和机制

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作者:Zhiqiang Ku #, Xuping Xie #, Edgar Davidson, Xiaohua Ye, Hang Su, Vineet D Menachery, Yize Li, Zihao Yuan, Xianwen Zhang, Antonio E Muruato, Ariadna Grinyo I Escuer, Breanna Tyrell, Kyle Doolan, Benjamin J Doranz, Daniel Wrapp, Paul F Bates, Jason S McLellan, Susan R Weiss, Ningyan Zhang, Pei-Yong S

Abstract

Antibody cocktails represent a promising approach to prevent SARS-CoV-2 escape. The determinants for selecting antibody combinations and the mechanism that antibody cocktails prevent viral escape remain unclear. We compared the critical residues in the receptor-binding domain (RBD) used by multiple neutralizing antibodies and cocktails and identified a combination of two antibodies CoV2-06 and CoV2-14 for preventing viral escape. The two antibodies simultaneously bind to non-overlapping epitopes and independently compete for receptor binding. SARS-CoV-2 rapidly escapes from individual antibodies by generating resistant mutations in vitro, but it doesn't escape from the cocktail due to stronger mutational constraints on RBD-ACE2 interaction and RBD protein folding requirements. We also identified a conserved neutralizing epitope shared between SARS-CoV-2 and SARS-CoV for antibody CoV2-12. Treatments with CoV2-06 and CoV2-14 individually and in combination confer protection in mice. These findings provide insights for rational selection and mechanistic understanding of antibody cocktails as candidates for treating COVID-19.

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