Metagenomic next-generation sequencing for the etiological diagnosis of rabies virus in cerebrospinal fluid

宏基因组下一代测序用于脑脊液中狂犬病毒的病原学诊断

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作者:Yong Liu, Xichao Mo, Ye Feng, Rodney E Willoughby, Xing Weng, Yuyang Wang, Xing Li, Junling Gao, Jinfei Tian, Jie Peng

Background

Rabies is a highly fatal disease. Once symptoms develop, death usually occurs within days. Survivors were occasionally reported in the literatures. Ante-mortem diagnosis remains a challenge in most rabies endemic countries. A novel, accurate diagnostic assay is highly desirable.

Conclusion

Metagenomic next-generation sequencing may be a useful screening tool for the etiological diagnosis of rabies, especially in the absence of timely rabies laboratory testing or in patients with no exposure history.

Methods

We used metagenomic next-generation sequencing (mNGS) to examine the cerebrospinal fluid (CSF) samples of a 49-year-old patient with rabies and validated the

Results

Metagenomic next-generation sequencing identified sequence reads uniquely aligned to the rabies virus (RABV). PCR confirmed the presence of the partial RABV N gene in the CSF. Phylogenetic analysis showed that the RABV grouped as an Asian clade, which is the most broadly distributed clade in China.

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