Abstract
Bees are important global pollinators that play a vital role in maintaining ecosystems and supporting global food production. They also exhibit a diversity of social organization, making them ideal model organisms for studying the evolution of sociality in animals. Recent advancements in genome sequencing have enabled researchers to address longstanding questions about the evolution of social behaviour in bees, particularly in the relatively few species that exhibit complex social structures, such as Apis. Whole genome phylogenies have enhanced our understanding of the complex evolutionary history of bees, providing a foundation for studying the evolution of specific traits, including eusociality. Recent transcriptomic and alternative splicing studies have advanced our understanding of how gene regulation and expression patterns contribute to behavioural plasticity, caste differentiation, and the emergence of social complexity. Comparative genomics across a range of bees with varying social behaviours has aided our understanding of the genomic features associated with social evolution and has shed light on its molecular underpinnings. Genomic approaches like GWAS and population genomic comparisons, combined with advanced sequencing technologies, have revolutionized the study of bee evolution, social behaviour, and environmental interactions. Pollen metabarcoding and environmental DNA (eDNA) techniques are now being used to quantify the intricate and complex interactions between bees and the plants they visit, and to identify other environmental factors, including pathogens that impact bee health. Additionally, techniques like museomics (using DNA from museum specimens) and broader genomic approaches have been instrumental in revealing how bees have been affected by anthropogenic changes. These tools offer valuable insights into population genetics, conservation biology, and the impact of environmental changes on bee populations. These advancements both provide critical insights into the molecular basis of eusociality and species adaptation and offer valuable tools for addressing the urgent challenges facing bee conservation due to anthropogenic change. By leveraging these genomic approaches, researchers can inform strategies for the preservation and sustainable management of bee populations worldwide.