Abstract
Chlorophyll fluorescence provides direct insights into the physiological status of algae, contributing to the understanding of the marine carbon cycle. However, in situ measurements of phytoplankton photosynthetic physiology remain relatively scarce in the Yangtze River Estuary (YRE), an ecosystem under intense anthropogenic pressure. Consequently, quantifying composition and physiological status variations of phytoplankton in this region is critical for understanding their ecological functions and responses. Spring cruise revealed that the warm and high-salinity oceanic region exhibited a greater abundance of dinoflagellates and chrysophytes, while the lower-salinity plume region was characterized by higher abundances of chlorophytes and cryptophytes. Diatoms dominated across all regions. The highest chlorophyll a concentration (6.3 μg/L) was observed in the oceanic region. Chlorophyll fluorescence indicated that the warm offshore community was more active, suggesting favorable phytoplankton growth. As temperature decreased and seawater mixed, the maximum relative electron transport rate (rETRmax) and the minimal saturated light intensity (I(k)) decreased, yet the overall community remained healthy. Despite the plume delivering abundant nutrients, phytoplankton activity was relatively low due to the cold spring water temperature. This study will provide a foundation for understanding phytoplankton dynamics under anthropogenic influences in the YRE and the adjacent East China Sea, supporting algal bloom monitoring and early warning efforts.