Building the observational medical outcomes partnership's T-MSIS Analytic File common data model

构建观察性医学结果合作组织的 T-MSIS 分析文件通用数据模型

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Abstract

OBJECTIVES: This effort used Databricks to create an Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) for Transformed MSIS Analytic File (TAF) Medicaid records. MATERIALS AND METHODS: Our process included data volume and content assessment of TAF, translation mapping of TAF concepts to OMOP concepts and the creation of Extract Transform and Load (ETL) code. RESULTS: The final CDM contained 119,048,562 individuals and 24,806,828,121 clinical observations from 2014 through 2018. DISCUSSION: The transformation of TAF into OMOP can support the generation of evidence with special attention to low-income patients on public insurance. Such patients are perhaps underrepresented in academic medical center patient populations. CONCLUSION: Our effort successfully used Databricks to transform TAF records into OMOP CDM. Our CDM can be used to generate evidence for OMOP network studies.

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