CRISPR-Cas9 screening reveals a distinct class of MHC-I binders with precise HLA-peptide recognition

CRISPR-Cas9 筛选揭示了一类具有精确 HLA 肽识别能力的 MHC-I 结合物

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作者:Tom A W Schoufour, Anneloes van der Plas-van Duijn, Ian Derksen, Marije Melgers, Jacqueline M F van Veenendaal, Claire Lensen, Mirjam H M Heemskerk, Jacques Neefjes, Ruud H M Wijdeven, Ferenc A Scheeren

Abstract

Human leukocyte antigen (HLA) class-I molecules present fragments of the cellular proteome to the T cell receptor (TCR) of cytotoxic T cells to control infectious diseases and cancer. The large number of combinations of HLA class-I allotypes and peptides allows for highly specific and dedicated low-affinity interactions to a diverse array of TCRs and natural killer (NK) cell receptors. Whether the divergent HLA class-I peptide complex is exclusive for interactions with these proteins is unknown. Using genome-wide CRISPR-Cas9 activation and knockout screens, we identified peptide-specific HLA-C∗07 combinations that can interact with the surface molecules CD55 and heparan sulfate. These interactions closely resemble the HLA class-I interaction with the TCR regarding both the affinity range and the specificity of the peptide and HLA allele. These findings indicate that various proteins can specifically bind HLA class-I peptide complexes due to their polymorphic nature, which suggests there are more interactions like the ones we describe here.

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