A Chinese SCA36 pedigree analysis of NOP56 expansion region based on long-read sequencing

基于长读测序的NOP56扩展区中国SCA36家系分析

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作者:Jinlong Zou, Fengyu Wang, Zhenping Gong, Runrun Wang, Shuai Chen, Haohan Zhang, Ruihua Sun, Chenhao Gao, Wei Li, Junkui Shang, Jiewen Zhang

Discussion

We extended the phenotypic spectrum of SCA36. We applied SMRT sequencing to reveal the correlation between genotype and phenotype of SCA36. Our findings indicated that long-read sequencing is well suited to characterize known repeat expansion.

Methods

We collected and described the clinical manifestations and imaging features of Han Chinese pedigree with three generations of SCA36. Also, we focused on structural variation analysis for intron 1 of the NOP56 gene by SMRT sequencing in the assembled genome.

Results

The main clinical features of this pedigree are late-onset ataxia symptoms, with a presymptomatic presence of affective and sleep disorders. In addition, the results of SMRT sequencing showed the specific repeat expansion region and demonstrated that the region was not composed of single GGCCTG hexanucleotides and there were random interruptions.

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