Microarray analysis of miRNA expression profiles following whole body irradiation in a mouse model

小鼠模型中全身照射后 miRNA 表达谱的微阵列分析

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作者:Molykutty J Aryankalayil, Sunita Chopra, Adeola Makinde, Iris Eke, Joel Levin, Uma Shankavaram, Laurel MacMillan, Claire Vanpouille-Box, Sandra Demaria, C Norman Coleman

Conclusion

Whole blood-based miRNA expression signatures might be used for predicting radiation exposures in a mass casualty nuclear incident.

Methods

Mice were whole body irradiated with X-rays (2 Gy-15 Gy); blood was collected at various time-points post-exposure; total RNA was isolated; miRNA microarrays were performed; miRNAs differentially expressed in irradiated vs. unirradiated controls were identified; feature extraction and classification models were applied to predict dose-differentiating miRNA signature.

Objective

To identify dose-differentiating miRNA signatures from whole blood samples of whole body irradiated mice.

Results

We observed a time and dose responsive alteration in the expression levels of miRNAs. Maximum number of miRNAs were altered at 24-h and 48-h time-points post-irradiation. A 23-miRNA signature was identified using feature selection algorithms and classifier models. An inverse correlation in the expression level changes of miR-17 members, and their targets were observed in whole body irradiated mice and non-human primates.

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