High-throughput sequencing explores the genetic variability of endophytic bacteria in three Sichuan bamboo species (Phyllostachys edulis, Bambusa rigida, and Pleioblastus amarus)

高通量测序探索四川三种竹子(Phyllostachys edulis、Bambusa rigida 和 Pleioblastus amarus)内生细菌的遗传变异性

阅读:3

Abstract

INTRODUCTION: Bamboo is a sustainable and degradable resource for sustenance, high-strength cellulose microfibers, and synthetic fiber in China. Endophytic bacteria enhance root development and ethylene levels, benefiting the host plants' physiology. METHODS: We investigated the population, diversity, and abundance of endophytic bacteria in the leaves of three bamboo species-Phyllostachys edulis, Bambusa rigida, and Pleioblastus amarus-using high-throughput 16S rDNA sequencing. RESULTS AND DISCUSSION: A total of 1,159 operational taxonomic units (OTUs) were obtained and further classified into 26 phyla, 64 classes, 158 orders, 270 families, 521 genera, and 811 species. The phyla with the highest abundance were Proteobacteria, Actinobacteria, and Myxococcota, and the highest genera included 1,174-901-12, Sphingomonas, and unclassified_f__Enterobacteriaceae. The relative richness of endophytic bacteria in the three species was in the following order: B. rigida > P. amarus > Ph. edulis. The PICRUSt functional richness analysis of endophytic bacteria indicated their involvement in six biological pathways: "cellular processes," "environmental information processing," "genetic information processing," "human diseases," "metabolism," and "organic systems." Among the 41 sub-functions, the most common were "amino acid metabolism," "carbohydrate metabolism," "cell motility," "cellular signaling," "energy metabolism," and "membrane transport." Our results provide precise knowledge for better managing bamboo forests and pave the way for isolating secondary metabolites and potential bioactive compounds.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。