PCR-Internal Transcribed Spacer (ITS) genes sequencing and phylogenetic analysis of clinical and environmental Aspergillus species associated with HIV-TB co infected patients in a hospital in Abeokuta, southwestern Nigeria

对尼日利亚西南部阿贝奥库塔一家医院中与 HIV-TB 共感染患者相关的临床和环境曲霉菌种进行 PCR-内部转录间隔区 (ITS) 基因测序和系统发育分析

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作者:Olufunke Bolatito Shittu, Oluwabunmi Molade Adelaja, Tolulope Mobolaji Obuotor, Sam Olufemi Sam-Wobo, Adeyemi Sunday Adenaike

Background

Aspergillosis has been identified as one of the hospital acquired infections but the contribution of water and inhouse air as possible sources of Aspergillus infection in immunocompromised individuals like HIV-TB patients have not been studied in any hospital setting in Nigeria.

Conclusion

Water and air in health care settings in Nigeria are important sources of Aspergillus sp. for HIV-TB patients.

Methods

DNA extraction, purification, amplification and sequencing of Internal Transcribed Spacer (ITS) genes were performed using standard protocols. Similarity search using BLAST on NCBI was used for species identification and MEGA 5.0 was used for phylogenetic analysis.

Objective

To identify and investigate genetic relationship between clinical and environmental Aspergillus sp. associated with HIV-TB co infected patients.

Results

Analyses of sequenced ITS genes of selected fourteen (14) Aspergillus isolates identified in the GenBank database revealed Aspergillus niger (28.57%), A. tubingensis (7.14%), A. flavus (7.14%) and A. fumigatus (57.14%). Aspergillus in sputum of HIV patients were Aspergillus niger, A. fumigatus, A. tubingensis and A. flavus. Also, A. niger and A. fumigatus were identified from water and open-air. Phylogenetic analysis of sequences yielded genetic relatedness between clinical and environmental isolates.

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